Adrián Segura Ortiz

Academic Portfolio

Adrián Segura Ortiz

Researcher in artificial intelligence and bioinformatics focused on context-guided computational methods for biomedical data analysis.

Current position Associate Team Coordinator

Khaos Research · 2025-12 - Present

Overview

Portfolio Summary

I am a computer scientist and researcher in artificial intelligence applied to bioinformatics, working at the intersection of computational methods, biomedical data analysis, evolutionary computation, and reproducible scientific software.

My academic background comprises Bachelor's Degree in Health Engineering with a specialization in Bioinformatics from Universidad de Málaga; Master's degree in Software Engineering and Artificial Intelligence from Universidad de Málaga; and Ph.D. in Computer Science from Universidad de Málaga. My professional experience spans 5 years and 7 months at Universidad de Málaga, complemented by research stays of 2 months at Kiyono Lab, belonging to GSES, belonging to The University of Osaka, located in Toyonaka, Japan; 1 month at INAB, belonging to Centre for Research and Technology Hellas, located in Thermi, Greece; 1 month at ORKAD, belonging to CRIStAL, belonging to Université de Lille, located in Lille, France; 3 months at Athena Research and Innovation Center in Information, Communication and Knowledge Technologies, located in Athens, Greece; and 3 months at ORKAD, belonging to CRIStAL, belonging to Université de Lille, located in Lille, France, for a total of 10 months abroad. Across professional appointments and research stays, this portfolio includes direct work at 5 institutions.

My research output includes 6 journal papers and 1 conference paper, including 2 papers in international collaboration and 1 paper in national collaboration. Within funded research projects, my roles include working team member in 4 research projects, and I have completed reviews for 15 manuscripts submitted to scientific journals.

The software portfolio includes 16 software projects and 4 published packages. The public software portfolio spans 15 repositories, with 64 stars and 3 forks. Package usage records 21,100 downloads.

My teaching activity includes 4 academic years at Universidad de Málaga, amounting to 180 hours across 4 academic years, 8 courses, and 4 degree programmes. This teaching activity began in the 2022/2023 academic year at Universidad de Málaga, when I was the youngest lecturer to take on teaching duties in the Department of Languages and Computer Science, a fact later acknowledged in a 2026 recommendation letter signed by the Director of the ETSII de la UMA. This teaching activity also includes 1 teaching innovation project. Academic supervision includes 1 final degree project and 1 external internship.

Scientific dissemination activity covers 2 scientific dissemination articles, 2 presentations, 27 press items, 17 social media items, and 1 TV media item across media, institutional channels, and public-facing formats. Press coverage spans 14 outlets. Social media items with available metrics account for 68,300 views; the highest recorded item reaches 38,700 views.

This academic trajectory has also been recognized with 4 honors: Master's End-of-Program Extraordinary Award Profesor José María Troya Linero; Bachelor's End-of-Program Extraordinary Award Profesor José María Troya Linero; Destacad@s Awards 2021; and Award for the Best High School Academic Record, and supported by 6 grants: D2 research stay grant, covering Postdoctoral Researcher (International Stay) at The University of Osaka; IMMUNO-model COST Action STSM grant, covering Postdoctoral Researcher (International Stay) at Centre for Research and Technology Hellas; ROAR-NET COST Action mobility grant, covering Postdoctoral Researcher (International Stay) at Université de Lille; FPU mobility grant, covering Postdoctoral Researcher (International Stay) at Athena Research and Innovation Center in Information, Communication and Knowledge Technologies; FPU mobility grant, covering Predoctoral Researcher (International Stay) at Université de Lille; and Predoctoral grant (FPU), covering PhD candidate - FPU Fellowship at Universidad de Málaga and Postdoctoral researcher - FPU-POP Fellowship at Universidad de Málaga.

Collaborations

Research Footprint and Publication Collaborations

Publication city Research stay Research appointment

Research Output

Publications

Output

Publications by Year

Journal paper Conference paper

Open Research Software

Software

Software Projects

Codebase

Languages

Python 53.3%
Java 16.2%
MATLAB 10.4%
JavaScript 4.5%
R 3.9%
Shell 2.3%
CSS 2.2%
Other 7.3%

Software Packages

Career

Academic Trajectory

Education Experience Research stay Certification Honor Grant-linked block

records

Career Details

Research stay

Kiyono Lab

2026-10 - 2026-11 · Toyonaka, Japan

Postdoctoral Researcher (International Stay)

Research stay

Postdoctoral Researcher (International Stay)

2026-10 - 2026-11

Postdoctoral international stay at Kiyono Lab, Graduate School of Engineering Science, The University of Osaka.

  • Location: Toyonaka, Japan
  • Host group: Kiyono Lab, Biophysics and Data Science Group
  • Purpose: Postdoctoral research, International stay
  • Grants: D2 research stay grant
Public

D2 research stay grant

2026-07 · Universidad de Málaga

Postdoctoral mobility

Reference: D2 - II Plan Propio 2026

2026-10 - 2026-11

Registered as awarded funding for a research stay at Kiyono Lab, The University of Osaka.

Research stay

INAB|CERTH

2026-09 - 2026-09 · Thermi, Greece

Postdoctoral Researcher (International Stay)

Research stay

Postdoctoral Researcher (International Stay)

2026-09 - 2026-09

Postdoctoral international stay at the Institute of Applied Biosciences of CERTH.

  • Location: Thermi, Greece
  • Host group: Institute of Applied Biosciences, CERTH
  • Purpose: Postdoctoral research, International stay
  • Grants: IMMUNO-model COST Action STSM grant
International network

IMMUNO-model COST Action STSM grant

COST Action CA21135 - Modelling immunotherapy response and toxicity in cancer (IMMUNO-model)

Postdoctoral mobility

Reference: E-COST-GRANT-CA21135-93b78129

2026-09 - 2026-09

Research stay

ORKAD

2024-04 - 2026-07 · Lille, France

Postdoctoral Researcher (International Stay) <- Predoctoral Researcher (International Stay)

Research stay

Postdoctoral Researcher (International Stay)

2026-07 - 2026-07

Postdoctoral international stay at the CRIStAL centre of the University of Lille focused on quality-diversity evolutionary biclustering and reproducible experimentation for heterogeneous data.

  • Location: Lille, France
  • Host group: ORKAD research group, CRIStAL centre
  • Purpose: Postdoctoral research, International stay
  • Grants: ROAR-NET COST Action mobility grant
  • Developed SALVI, a Python framework for quality-diversity biclustering of heterogeneous data with explicit data preparation, pattern inference, objective evaluation, MOME-style search, final selection, and reproducible scientific experimentation protocols.
Research stay

Predoctoral Researcher (International Stay)

2024-04 - 2024-06

Predoctoral international stay at the CRIStAL centre of the University of Lille.

  • Location: Lille, France
  • Host group: ORKAD research group, CRIStAL centre
  • Purpose: Doctorate, International stay
  • Grants: FPU mobility grant
  • Designed an evolutionary biclustering framework specialised in biomedical data and guided by domain context.
International network

ROAR-NET COST Action mobility grant

2026-07 · COST Action CA22137 - Randomised Optimisation Algorithms Research Network (ROAR-NET)

Postdoctoral mobility

Reference: E-COST-GRANT-CA22137-a111cd9a

2026-07 - 2026-07

Research stay

Athena Research Center

2026-04 - 2026-06 · Athens, Greece

Postdoctoral Researcher (International Stay)

Research stay

Postdoctoral Researcher (International Stay)

2026-04 - 2026-06

Postdoctoral international stay at Athena Research Center focused on reproducible benchmark workflows for gene regulatory network discovery and evaluation.

  • Location: Athens, Greece
  • Purpose: Postdoctoral research, International stay
  • Grants: FPU mobility grant
  • Developed ANDREA, a catalog-driven platform for benchmark expression dataset generation, gene regulatory network inference, evaluation, and cross-tool network comparison workflows.
Public

FPU mobility grant

Ministerio de Ciencia e Innovación. Universidades

Postdoctoral mobility

Reference: FPUES21/00006

2026-04 - 2026-06

Experience

Universidad de Málaga

2022-12 - Present · Málaga, Andalusia, Spain

Postdoctoral researcher - FPU-POP Fellowship <- PhD candidate - FPU Fellowship

Current experience

Postdoctoral researcher - FPU-POP Fellowship

2025-12 - Present

  • Location: Málaga, Andalusia, Spain
  • Type: Full-time, On-site
  • Department: Lenguajes y Ciencias de la Computación (LCC)
Experience

PhD candidate - FPU Fellowship

2022-12 - 2025-12

  • Location: Málaga, Andalusia, Spain
  • Type: Full-time, On-site
  • Department: Lenguajes y Ciencias de la Computación (LCC)
Tasks (7)
  • Designed evolutionary algorithms and hybrid artificial intelligence methods for bioinformatics problems.
  • Integrated over 25 gene regulatory network inference techniques in reproducible Docker environments and PyPI packages.
  • Developed asynchronous and parallel evolutionary algorithms for biologically informed network consensus.
  • Implemented multi-objective biclustering algorithms for clinical and genomic data.
  • Published results in peer-reviewed journals and presented work at conferences with open-source reproducibility assets.
  • Taught 8 undergraduate courses across 4 degree programmes over 4 academic years.
  • Supervised 1 Bachelor's thesis and 1 external internship.
Experience

Khaos Research

2021-07 - Present · Málaga, Andalusia, Spain

Associate Team Coordinator <- Associate Software Engineer <- Junior Software Engineer

Current experience

Associate Team Coordinator

2025-12 - Present

  • Location: Málaga, Andalusia, Spain
  • Type: Part-time, On-site
  • Group: Khaos Research
Experience

Associate Software Engineer

2022-12 - 2025-12

  • Location: Málaga, Andalusia, Spain
  • Type: Part-time, On-site
  • Group: Khaos Research
Tasks (5)
  • Developed a workflow orchestration tool in Go with SQLite storage, JSON/YAML component definitions, and Kubernetes and Nomad execution support.
  • Administered computational resources using Proxmox and vSphere for deployment, maintenance, and monitoring of virtual machines.
  • Processed multisource satellite imagery from Sentinel-2, PlanetScope, and Landsat, including download automation, temporal composites, spectral indices, and band manipulation.
  • Developed Gradio interfaces for remote sensing model execution and result visualization.
  • Maintained OpenProject installations, upgrades, deployments, and project-management workflows.
Experience

Junior Software Engineer

2021-07 - 2022-12

  • Location: Málaga, Andalusia, Spain
  • Type: Full-time, On-site
  • Group: Khaos Research
Tasks (5)
  • Developed Progressive Web Applications with Next.js and MongoDB for crop sample data recording and analysis.
  • Encapsulated Python, Java, and R scripts into Docker containers for EnBiC2-Lab components.
  • Developed an evolutionary algorithm with JMetal and EPANET simulations to predict irrigation connector properties.
  • Contributed to Angular interfaces for scientific workflow execution.
  • Managed project tasks and coordination through OpenProject.
PhD

Ph.D. in Computer Science

Universidad de Málaga · 2022-10 - 2025-12

Outstanding (Cum Laude) with International Mention

Grants: Predoctoral grant (FPU)

Doctoral thesis: Context-Guided Computational Methods for the Consensus Inference of Gene Regulatory Networks and the Detection of Co-expression Patterns

Context-guided computational methods for biomedical data analysis

Certification

Jornadas de Formación, Mejora e Investigación Docente

Universidad de Málaga · 2025-07

  • 10 hours
  • Teacher training and educational innovation course.
Certification

IMFAHE International Mentor Program Student Certificate (2024-2025)

IMFAHE · 2025-06

Public

FPU mobility grant

2024-03 · Ministerio de Ciencia e Innovación. Universidades

Postdoctoral mobility

Reference: EST24/00186

2024-06

Certification

Introduction to the Use of Generative Artificial Intelligence in University Teaching

Universidad de Málaga · 2023-10

  • 12 hours
  • University teaching certification.
Honor

Master's End-of-Program Extraordinary Award Profesor José María Troya Linero

2023-07 · Universidad de Málaga

Award for the top academic record in the Master's in Software Engineering and Artificial Intelligence.

Public

Predoctoral grant (FPU)

2022-12 · Ministry of Science, Innovation and Universities

Predoctoral research funding

Reference: FPU21/03837

2022-12 - Present

Merit-based grant supporting doctoral research and its postdoctoral orientation phase.

Honor

Bachelor's End-of-Program Extraordinary Award Profesor José María Troya Linero

2022-07 · Universidad de Málaga

Award for the best academic record in the Bachelor's in Health Engineering program, considering both specializations.

MSc

Master's degree in Software Engineering and Artificial Intelligence

Universidad de Málaga · 2021-10 - 2022-07

9.67/10 (With Honors in 6 subjects)

Final Master Project: New advances in evolutionary machine learning for gene regulatory network inference

Evolutionary machine learning for gene regulatory network inference

Honor

Destacad@s Awards 2021

2021-11 · BBVA, Diario Sur

Recognition as one of the top three academic records at the School of Computer Engineering for the graduating class of 2020/2021.

BSc

Bachelor's Degree in Health Engineering with a specialization in Bioinformatics

Universidad de Málaga · 2017-10 - 2021-07

8.89/10 (With Honors in 17 subjects)

Final Degree Project: Design of a workflow for the analysis of massive sequencing data

Massive sequencing data analysis

Experience

CIMES

2021-03 - 2021-06 · Málaga, Andalusia, Spain

Student Trainee

Experience

Student Trainee

2021-03 - 2021-06

  • Location: Málaga, Andalusia, Spain
  • Type: Internship, Hybrid
Tasks (6)
  • Developed an automated NGS analysis pipeline for tumor samples on the Picasso supercomputer.
  • Programmed Bash and R scripts with GNU Parallel for large-scale sample processing.
  • Integrated FastQC, MultiQC, Qualimap, and vcftoolz compare for quality control and visualization.
  • Evaluated multiple aligners and variant callers to reduce false positives.
  • Annotated variants using ANNOVAR, OpenCRAVAT, MyVariant, and biomedical databases.
  • Detected copy number alterations and gene fusions with unified R reporting.
Certification

Boost Your Future - Professional Development Workshop

ESESA · 2017-09

Honor

Award for the Best High School Academic Record

2017-06 · Málaga City Council, Education Department

9th City of Málaga Education Awards.

Certification

Cambridge English: Preliminary (PET) - Level B1

University of Cambridge · 2015-07

  • Credential ID: 0049218488

Projects

Research and Teaching Innovation Projects

Working team member Research team member PI / Co-PI

Teaching

Classes and Supervision

Classroom hours

Classroom Hours by Academic Year

UMA
36 h
2022/2023
56.1 h
2023/2024
60 h
2024/2025
27.9 h
2025/2026
Classroom hours

Classroom Hours by Degree Programme

UMA
Grado en Ingeniería de la Salud 90.8 h
Grado en Ingeniería Informática 72 h
Grado en Biología 11.2 h
Grado en Ingeniería del Software 6 h
UMA
Class Supervision
2023 2024 2025
University class

Análisis y Diseño de Algoritmos

Grado en Ingeniería Informática

2025/2026

Lenguajes y Ciencias de la Computación (LCC)

18.0 hours

University class

Biología de Sistemas

Grado en Ingeniería de la Salud

2025/2026

Lenguajes y Ciencias de la Computación (LCC)

9.9 hours

External internship tutoring

External extracurricular internship tutoring

Grado en Bioquímica

External internship tutor

300.0 hours

University class

Análisis y Diseño de Algoritmos

Grado en Ingeniería del Software

2024/2025

Lenguajes y Ciencias de la Computación (LCC)

6.0 hours

University class

Análisis y Diseño de Algoritmos

Grado en Ingeniería Informática

2024/2025

Lenguajes y Ciencias de la Computación (LCC)

36.0 hours

University class

Diseño y Explotación de Almacenes de Datos

Grado en Ingeniería Informática

2024/2025

Lenguajes y Ciencias de la Computación (LCC)

18.0 hours

University class

Estándares de Datos

Grado en Ingeniería de la Salud

2023/2024

Lenguajes y Ciencias de la Computación (LCC)

44.9 hours

University class

Informática

Grado en Biología

2023/2024

Lenguajes y Ciencias de la Computación (LCC)

11.2 hours

University class

Bases de Datos

Grado en Ingeniería de la Salud

2022/2023

Lenguajes y Ciencias de la Computación (LCC)

36.0 hours

Knowledge Transfer

Dissemination and Media

49 Total dissemination items
Scientific articles
2
Presentations
2
Press items
27
Social media items
17
TV media items
1

Entities

Organizations

19 Linked organizations
5 Countries
7 Cities

France

Lille

University

Université de Lille

ULille

Research Stays · 4 months Publications · 0.5 papers

Contained organizations

Research laboratory

CRIStAL

Centre de Recherche en Informatique, Signal et Automatique de Lille

ULille > CRIStAL

Research Stays · 4 months Publications · 0.25 papers

Contained organizations

Research team

ORKAD

Operational Research, Knowledge And Data

ULille > CRIStAL > ORKAD

Research Stays · 4 months Publications · 0.25 papers
Research unit

INFINITE

Institute for Translational Research in Inflammation

ULille > INFINITE

Publications · 0.25 papers